From: Dallas Warren (
Date: Thu Jul 13 2017 - 20:07:58 CDT

I would hazard to say that the permissions are incorrectly set for the
hole script?
Catch ya,

Dr. Dallas Warren
Drug Delivery, Disposition and Dynamics
Monash Institute of Pharmaceutical Sciences, Monash University
381 Royal Parade, Parkville VIC 3052
When the only tool you own is a hammer, every problem begins to resemble a nail.

On 4 July 2017 at 20:31, Sourav Pal <> wrote:
> Hii,
> I am Sourav Pal from kolkata.I am pretty much interested to utilize the HOLE packages for pore sizes determination. i also tried many time to download the software and the installation. but unfortunately i failed many times.I utilized the VMD for LINUXAMD64, version 1.9.1.
> So, can you please send me the the way of installation of HOLE packages.
> Because in ,I got some installation process. but when I run the Hole::runhole $sel it shows the following error:
> couldn't execute "/usr/local/hole2/exe/hole": permission denied.
> Can any one help me to solve this issue.
> Thank you.
> Sourav Pal
> CSIR- Indian Institute of Chemical Biology
> 4, Raja S.C. Mullick Road,
> Kolkata, West Bengal, India,Pin:-700 032