From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Sep 29 2004 - 12:40:52 CDT

Shahid,
  This is really more of a question for the NAMD-L mailing list,
since you're asking about doing minimization and not visualization.
I'd recommend asking there, they should be able to help you quickly.

  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Sep 29, 2004 at 11:39:50AM -0400, Shahid Qamar wrote:
> Hi,
> I am trying to minimize a system and want to keep the position of any two
> atoms fix. I want that position does not change while I minimize it.
> I am using namd with Amber topology and coordinates file. I also use VMD to
> look the molecule.
> Any idea about it?
>
>
> Thanks
>
> Shahid
>
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