VMD-L Mailing List

From: leila karami (karami.leila1_at_gmail.com)
Date: Tue Nov 30 2010 - 00:41:58 CST

Dear John Stone

thanks for your attention.

You didn't answer me about my first question (I want to know the percentage
of existence of each water mediated hydrogen bonds between protein and dna
during my trajectory. Can I use bridging_waters.tcl in VMD. is it true? In
following web page, (in HOW IT WORKS section)there are Something like that
about me:
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/bridging_waters/.
). 

-- 
Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group