VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Fri Dec 07 2007 - 09:20:28 CST

hi michel,

did you check out the VMD script library?
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/trajectory_path/
looks pretty close to what you are looking for.

cheers,
   axel.

On Dec 7, 2007 9:30 AM, L. Michel Espinoza-Fonseca
<mef_at_ddt.biochem.umn.edu> wrote:
> Hi all,
>
> I have a NAMD-generated trajectory of the unbinding of a peptide from
> a protein. I was wondering if there is any way to draw the trajectory
> of the COM of either the peptide or a selected sidechain using VMD
> (for example, by creating a path of dummy atoms). All comments will be
> highly appreciated.
>
> Thanks!
> Michel
>
> 

-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
  Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
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