VMD-L Mailing List

From: Fabio Trovato (f.trovato_at_sns.it)
Date: Fri Mar 13 2009 - 11:46:44 CDT

Hello

my name is Fabio and I was trying to generate the complete
biomolecule of a list of pdb files
using the script mono2poly found at http://ftp.ks.uiuc.edu/Research/
vmd/script_library/
In some cases the script didn't work fine. For example if I do it for
the molecule 2JAD:

  source mono2poly.tcl
  mol delete all
  mol new 2JAD.pdb
  set sel [atomselect top all]
  set matrix [parsematrix 2JAD.pdb]
  mono2poly -o 2JAD_biological $sel $matrix

I obtain, after the command set matrix [parsematrix 2JAD.pdb]
the following error:

unmatched open brace in list

Can you help me to fix this problem?
Thank you