VMD-L Mailing List

From: Atanu Maity (atanuchem48_at_gmail.com)
Date: Fri Oct 09 2015 - 01:43:43 CDT

Dear users,

This may be a very general query, but I have searched many previous threads
but could not find what are the range used for phi-psi to assign secondary
structure.

The command "vmd_calculate_structure" follwed by " $atomselection get
structure" prints the one letter code ( e. g. T/H/C).

I tried to find a source file where the cutoff may be mentioned, but could
not find.

Can someone help me, at least what should I check to find it.

With regards,

Atanu Maity

Research Scholar
Bioinformatics Center
Bose Institute