VMD-L Mailing List
From: m.raviprasad_at_ndsu.edu
Date: Wed Aug 11 2010 - 12:55:52 CDT
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Hi
You have to have coordinate file [ PDB] and structure file [ PSF ] to
visualize any molecular model correctly. PDB file gives you only
coordinates and it does not have connectivity. Therefore try to make PSF
file for your model and load both [ PDB and PSF ] to the VMD.
Note : To make PSF you could use VMD plugins.
Ravi
>
> Hello,
>
>
>
> I'm working on adsorption of dioxins into zeollite.
>
> All the structures are built with Material studio and then exported (.pdb)
> to be visualized with VMD.
>
> However, the structure is different. Some bonds are missing and the nature
> of some atoms is different.
>
> Can you help ???
>
> Thanks
>
>
>
> Candy
>
- Next message: Cun Zhang: "About Atom Index Order"
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- In reply to: candy deck: "Problem Material Studio/VMD"
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