VMD-L Mailing List

From: Francesco Pietra (chiendarret_at_yahoo.com)
Date: Sun May 27 2007 - 02:44:32 CDT

Axel, thanks. Here what you asked:
francesco_at_deb32:~$ ldd /usr/local/lib/vmd/vmd_LINUX
        linux-gate.so.1 => (0xffffe000)
        libGL.so.1 => /usr/lib/libGL.so.1 (0xb7efb000)
        libGLU.so.1 => /usr/lib/libGLU.so.1
(0xb7e7c000)
        libpthread.so.0 =>
/lib/tls/i686/cmov/libpthread.so.0 (0xb7e6a000)
        libX11.so.6 => /usr/lib/libX11.so.6
(0xb7d7e000)
        libXft.so.2 => /usr/lib/libXft.so.2
(0xb7d6b000)
        libdl.so.2 => /lib/tls/i686/cmov/libdl.so.2
(0xb7d66000)
        libutil.so.1 =>
/lib/tls/i686/cmov/libutil.so.1 (0xb7d62000)
        libstdc++.so.5 => not found
        libm.so.6 => /lib/tls/i686/cmov/libm.so.6
(0xb7d3d000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1
(0xb7d32000)
        libc.so.6 => /lib/tls/i686/cmov/libc.so.6
(0xb7c01000)
        libXext.so.6 => /usr/lib/libXext.so.6
(0xb7bf2000)
        libXxf86vm.so.1 => /usr/lib/libXxf86vm.so.1
(0xb7bed000)
        libdrm.so.2 => /usr/lib/libdrm.so.2
(0xb7be6000)
        libstdc++.so.6 => /usr/lib/libstdc++.so.6
(0xb7b01000)
        /lib/ld-linux.so.2 (0xb7f74000)
        libXau.so.6 => /usr/lib/libXau.so.6
(0xb7afe000)
        libXdmcp.so.6 => /usr/lib/libXdmcp.so.6
(0xb7af8000)
        libfontconfig.so.1 =>
/usr/lib/libfontconfig.so.1 (0xb7acd000)
        libfreetype.so.6 => /usr/lib/libfreetype.so.6
(0xb7a63000)
        libz.so.1 => /usr/lib/libz.so.1 (0xb7a4f000)
        libXrender.so.1 => /usr/lib/libXrender.so.1
(0xb7a47000)
        libexpat.so.1 => /usr/lib/libexpat.so.1
(0xb7a27000)
francesco_at_deb32:~$

yah, listdc++.so.6

Therefore, please see also:

francesco_at_deb32:~$ apt-file search libstdc++.so.6
lib64stdc++6: usr/lib64/libstdc++.so.6
lib64stdc++6: usr/lib64/libstdc++.so.6.0.8
lib64stdc++6-4.1-dbg:
usr/lib/debug/usr/lib64/libstdc++.so.6.0.8
libstdc++6: usr/lib/libstdc++.so.6
libstdc++6: usr/lib/libstdc++.so.6.0.8
libstdc++6-4.1-dbg: usr/lib/debug/libstdc++.so.6
libstdc++6-4.1-dbg: usr/lib/debug/libstdc++.so.6.0.8
libstdc++6-4.1-dbg:
usr/lib/debug/usr/lib/libstdc++.so.6.0.8
libstdc++6-dbg: usr/lib/debug/libstdc++.so.6
libstdc++6-dbg: usr/lib/debug/libstdc++.so.6.0.3
libstdc++6-dbg: usr/lib64/debug/libstdc++.so.6
libstdc++6-dbg: usr/lib64/debug/libstdc++.so.6.0.3
francesco_at_deb32:~$

and

francesco_at_deb32:~$ apt-file search libstdc++.so.5
libstdc++5: usr/lib/libstdc++.so.5
libstdc++5: usr/lib/libstdc++.so.5.0.7
libstdc++5-3.3-dbg: usr/lib/debug/libstdc++.so.5
libstdc++5-3.3-dbg: usr/lib/debug/libstdc++.so.5.0.7
francesco_at_deb32:~$

(I had run 'apt-file update' before; linux debian i386
etch)

--- Axel Kohlmeyer <akohlmey_at_cmm.chem.upenn.edu>
wrote:

> On Sat, 26 May 2007, Francesco Pietra wrote:
>
> FP> Not solved entirely:
> FP> francesco_at_deb32:~$ /usr/local/bin/vmd
> FP> [1] 5960
> FP> francesco_at_deb32:~$ /usr/local/bin/vmd -dispdev
> text
> FP> /usr/local/lib/vmd/vmd_LINUX: error while
> loading
> FP> shared libraries: libstdc++.so.5: cannot open
> shared
> FP> object file: No such file or directory
>
> now this is looking serious. however, it does not
> directly
> mean, that libstdc++.so.5 is the offender, but a
> library
> that it depends on.
>
> please try:
> ldd /usr/local/lib/vmd/vmd_LINUX
>
> and report the output. it should be something
> similar to:
> [akohlmey_at_zero akohlmey]$ ldd
> /home/akohlmey/lib/vmd-185/vmd_LINUX
> libGL.so.1 => /usr/X11R6/lib/libGL.so.1
> (0x40026000)
> libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1
> (0x40091000)
> libpthread.so.0 => /lib/i686/libpthread.so.0
> (0x4010e000)
> libX11.so.6 => /usr/X11R6/lib/libX11.so.6
> (0x4015e000)
> libXft.so.2 => /usr/X11R6/lib/libXft.so.2
> (0x4023d000)
> libdl.so.2 => /lib/libdl.so.2 (0x4024f000)
> libutil.so.1 => /lib/libutil.so.1
> (0x40253000)
> libstdc++.so.5 => /usr/lib/libstdc++.so.5
> (0x40257000)
> libm.so.6 => /lib/i686/libm.so.6
> (0x4030a000)
> libgcc_s.so.1 => /lib/libgcc_s.so.1
> (0x4032c000)
> libc.so.6 => /lib/i686/libc.so.6
> (0x40334000)
> libXext.so.6 => /usr/X11R6/lib/libXext.so.6
> (0x4046d000)
> /lib/ld-linux.so.2 => /lib/ld-linux.so.2
> (0x40000000)
> libXrender.so.1 =>
> /usr/X11R6/lib/libXrender.so.1 (0x4047b000)
> libfontconfig.so.1 =>
> /usr/lib/libfontconfig.so.1 (0x40484000)
> libexpat.so.0 => /usr/lib/libexpat.so.0
> (0x404a9000)
> libfreetype.so.6 =>
> /usr/lib/libfreetype.so.6 (0x404c9000)
>
>
> ciao,
> axel.
>
> FP> francesco_at_deb32:~$
> FP>
> FP> It does not find libstdc++.so.5, which actually
> is at
>
> please don't get confused, the shared linker on
> linux is not
> always very obvious in its error message.
>
> ciao,
> axel.
>
> FP>
> FP> /usr/lib/libstdc++.so.5
> FP> /usr/lib/libstdc++.so.5.0.7
> FP> /usr/lib/debug/libstdc++.so.5
> FP> /usr/lib/debug/libstdc++.so.5.0.7
> FP>
> FP> Where to make a link to /usr/lib/libstdc++.so.5?
> FP>
> FP>
>
> --
>
=======================================================================
> Axel Kohlmeyer akohlmey_at_cmm.chem.upenn.edu
> http://www.cmm.upenn.edu
> Center for Molecular Modeling -- University
> of Pennsylvania
> Department of Chemistry, 231 S.34th Street,
> Philadelphia, PA 19104-6323
> tel: 1-215-898-1582, fax: 1-215-573-6233,
> office-tel: 1-215-898-5425
>
=======================================================================
> If you make something idiot-proof, the universe
> creates a better idiot.
>
>

       
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