From: Alicia Hopkins (hopkins_at_magnet.fsu.edu)
Date: Sun Sep 19 2004 - 08:42:12 CDT

On a windows box (using 1C3W.pdb as the protein model)

I use the following commands:

vmd> set reference_sel [atomselect 0 all]
atomselect 0
vmd> set cutoff 5
5
vmd> set angle 45
45
vmd> set hblist [measure hbonds $cutoff $angle $reference_sel]
{} {} {}

is my result. Previously, I was trying this on my Linux, and I was
receiving the same result, any ideas?

Cheers,

Alicia C. Hopkins
CIMAR / National High Magnetic Field Laboratory
1800 East Paul Dirac Drive
Tallahassee, Florida 32310
Phone: 850-644-1309
Fax: 850-644-1366
ahopkins_at_chem.fsu.edu