VMD-L Mailing List

From: Ali Alizadeh (ali.alizadehmoj_at_gmail.com)
Date: Wed Aug 07 2013 - 12:42:56 CDT

Dear Axel,

Thank you for your reply.

Can you enlighten some of aspects? I can recognize and build a list of all
bonds but I do not know how can I

remove some especial bonds from this list.

On Wed, Aug 7, 2013 at 6:40 PM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:

> **
> Yes.
> --
> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
> International Centre for Theoretical Physics, Trieste. Italy.
> ------------------------------
> *From: * Ali Alizadeh <ali.alizadehmoj_at_gmail.com>
> *Sender: * owner-vmd-l_at_ks.uiuc.edu
> *Date: *Wed, 7 Aug 2013 17:33:40 +0430
> *To: *<vmd-l_at_ks.uiuc.edu>
> *Subject: *vmd-l: Considering special bonds not all of bonds,
>
>
> Dear All users
>
> I have three bond types in my simulation box. I want to make a system.data
> file from my pdb.file
>
> so that it includes just one of my three bonds and I should do this for
> angles, too. Are there any
>
> methods in topo tools plugin for this intention?
>
> --
> Sincerely
>
> Ali Alizadeh
> 

-- 
Sincerely
Ali Alizadeh