VMD-L Mailing List

From: maria goranovic (mariagoranovic_at_gmail.com)
Date: Tue Nov 22 2011 - 06:04:46 CST

Hi Davide

Thanks for the help. I was hoping to write or get help writing something
more flexible within vmd as a script, since the eigenvectors and
eigenvalues are already calculated. I was wondering if there were other
suggestions?

Thank you all

On Mon, Nov 21, 2011 at 7:37 PM, Davide Provasi <davide.provasi_at_gmail.com>wrote:

> Maria- I'm not sure whether this is the easiest way,
> but you can do it using the R bio3d package
> http://mccammon.ucsd.edu/~bgrant/bio3d/html/mktrj.pca.html
>
> good luck
> Davide
>
>
>
> --
> Davide Provasi
> Dept. of Structural and Chemical Biology
> Mount Sinai School of Medicine
> Icahn Medical Institute Building
> 1425 Madison Avenue, Box 1677
> New York, NY 10029-6574
> Tel.:212-659-8618
> Fax: 212-849-2456
>
>
>
> On Mon, Nov 21, 2011 at 5:35 AM, maria goranovic
> <mariagoranovic_at_gmail.com> wrote:
> > Hi
> > I used g_covar in the GROMACS utility to come up with a series of
> > eigenvectors and eigenvalues for my protein trajectory. How does one
> make a
> > movie of this in vmd?
> > --
> > Maria G.
> > Technical University of Denmark
> > Copenhagen
> >
> 

-- 
Maria G.
Technical University of Denmark
Copenhagen