VMD-L Mailing List

From: PAUL NEWMAN (paulclizana_at_gmail.com)
Date: Wed Jun 22 2011 - 20:41:32 CDT

Dear VMD User,

I'm restarting a simulation from binary files and when I convert to a pdb; I
found that my system has a lot of water that cannot represented by a number
ID in the PDB. I was wondering if there is a way to divide the water in
groups like WAT1; WAT2; WAT3... etc so each water will have a unique index
and not a ****.

Here is what it is shown in the pdb.

ATOM 36b9d H1 WAT X**** 137.225 111.685 82.422 0.00 0.00

Thanks for the help 

-- 
Cheers,
Paul