VMD-L Mailing List

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Fri Oct 31 2003 - 12:18:34 CST

hmmm. guess I was confused...I thought I had done it before but I guess I
am wrong.

Brian

On Fri, 31 Oct 2003, Justin Gullingsrud wrote:

>
> On Oct 31, 2003, at 8:12 AM, Brian Bennion wrote:
>
> > In the graphical representations box under the trajectory tab, you can
> > turn on "update selection every frame" button and that should work.
> >
>
> Are you sure this works? If it does it's a bug (or should I say,
> unintended feature? ;) Normally the secondary structure stays as it
> is, even if you update everything else about the rep, until you call
> "mol ssrecalc <molid>" (or the equivalent).
>
> Justin
>
> > Brian
> >
> > On Fri, 31 Oct 2003, Jérôme Hénin wrote:
> >
> >> Hi all,
> >>
> >> How can I tell VMD to recalculate (using STRIDE) the secondary
> >> structure of a
> >> protein for every frame of a trajectory?
> >>
> >> Thanks
> >>
> >
> > --
> > *****************************************************************
> > **Brian Bennion, Ph.D. **
> > **Computational and Systems Biology Division **
> > **Biology and Biotechnology Research Program **
> > **Lawrence Livermore National Laboratory **
> > **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> > **7000 East Avenue phone: (925) 422-5722 **
> > **Livermore, CA 94550 fax: (925) 422-6605 **
> > *****************************************************************
> >
> >
>
> --
> It is easier to make a theory of everything, than a theory of
> something. -- Aharon Katchalsky
>
> 

-- 
*****************************************************************
**Brian Bennion, Ph.D.                                         **
**Computational and Systems Biology Division                   **
**Biology and Biotechnology Research Program                   **
**Lawrence Livermore National Laboratory                       **
**P.O. Box 808, L-448    bennion1_at_llnl.gov                     **
**7000 East Avenue       phone: (925) 422-5722                 **
**Livermore, CA  94550   fax:   (925) 422-6605                 **
*****************************************************************