VMD-L Mailing List

From: Vermaas, Joshua (Joshua.Vermaas_at_nrel.gov)
Date: Fri Oct 27 2017 - 11:44:43 CDT

Yes, but the atomselection text is a bit weird. "ringsize 6 from resname
PHE" would get you all of the ring carbons from a phenylalanine residue.
You could get all the atoms in a 5 membered ring within your system with
"ringsize 5 from all".

-Josh

On 10/27/2017 09:51 AM, MD Simulation wrote:
> Hello,
>
> Using PaperChain, you can color rings. Is it possible to get the
> atoms in each ring system?
>
> Thanks