VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Sat Jun 01 2013 - 11:05:38 CDT

On Sat, Jun 1, 2013 at 4:55 PM, hamid mosaddeghi <hamid592004m_at_yahoo.com> wrote:
> Dear Users
>
> I have HISTORY file (trajectory of dl_poly 4) in cclude water, protein and
> metal. I load it in VMD, I want to remove water, I go to
>
> Graphical Representations --> selection --> type "not water", but I can not
> remove them from movie. why? how fix it and see movie without waters?

how does the dlpoly trajectory file communicate to VMD which atoms are
part of water molecules?
does it contain a suitable residue name? how do you think that VMD
should know which atoms belong to a water?

axel.

>
> Best Regards 

--
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
International Centre for Theoretical Physics, Trieste. Italy.