VMD-L Mailing List
From: Christopher Gillespie (gillescche_at_gmail.com)
Date: Mon Jul 28 2008 - 09:43:47 CDT
- Next message: Rudra Banerjee: "water box...density!!!"
- Previous message: Christopher Gillespie: "Re: solvation and box size"
- In reply to: Rudra Banerjee: "water box...density!!!"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
1. the terminal window should display the number of waters, then you
can get the box dimensions and calculate the density
2. use the solvate plugin in VMD.
Chris
On Jul 28, 2008, at 6:02 AM, Rudra Banerjee wrote:
> i have two question about solvating protein:
> 1. how can i know the density of water in the waret box or how many
> water molecule created?
> 2. is it possible to create a blank water box(i.e. which contains
> no protein/residue)?
>
>
> --
> Rudra
> JRF; SNBNCBS
> http://www.bose.res.in/~rudra
>
> A bus station is where a bus stops. A train station is where a train
> stops. On my desk I have a work station.
>
> Please, if possible, don't send me MS Word or PowerPoint attachments
> Why?See: http://www.gnu.org/philosophy/no-word-attachments.html
>
>
> Explore your hobbies and interests. Go to http://
> in.promos.yahoo.com/groups/
>
- Next message: Rudra Banerjee: "water box...density!!!"
- Previous message: Christopher Gillespie: "Re: solvation and box size"
- In reply to: Rudra Banerjee: "water box...density!!!"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
