VMD-L Mailing List

From: Fernando Vallejos-Burgos (nandobike_at_gmail.com)
Date: Fri Oct 07 2016 - 06:03:34 CDT

For the first, refer to pbc tools:
http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/ <http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/>

For the second, in the VMD main menu: Mouse -> Labels -> Bonds (or angles)…. then click in the atoms

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Dr. Fernando Vallejos-Burgos
Researcher at Center for Energy and Environmental Science
Shinshu University, Wakasato, Nagano 380-8553, Japan
Personal web: http://www.vallejos.cl <http://www.vallejos.cl/>
Research group web: http://goo.gl/tcpTuy <http://goo.gl/tcpTuy>

> On 2016 Oct 7, at 15:03, Harish Srinivasan <harishlglk1992_at_gmail.com> wrote:
>
> How is it possible to get a cubic or non-cubic box (my simulation box or a custom box) to be seen in the VMD graphics window along with my atoms ? Is there are also a possible way to click on the atoms and find distance between them or angle between three of them etc ?
>
> Thank you,
> Harish