VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Tue Jul 16 2013 - 10:57:40 CDT

Yes, but you have to do a bit of TCL scripting.
An understanding of atomselections and the "measure fit " command will be
useful. The are various TCL example scripts floating around the internet
that show how to loop through all frames of the trajectory.

HTH,
Ajasja

On 16 July 2013 16:18, Andrei Tudor <andrei.tudor.1_at_ulaval.ca> wrote:

>
> Hello,
>
> I am trying to center a system around the backbone of a protein, just like
> the align from RMSD Trajectory Tool does, but from command line.
> Is there such a command already implemented?
>
> Thanks,
> Andrei
>