VMD-L Mailing List

From: Tamas Hegedus (tamas_at_hegelab.org)
Date: Tue Sep 17 2019 - 04:31:40 CDT

Hi,

I am calculating the optimal/suboptimal paths using the subopt code from
the NetorkView package.
It works for most of my selected source/sink residue pairs. However,
there are two pairs, which produce segmentation fault.

subopt contact.dat subopath_271_333.out 15 271 333
subopt contact.dat subopath_271_333.out 5 271 333

..
1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147
1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161
1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175
1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189
1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203
1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 <-edgeConnectivity
Done
Calculating shortest distance between selections.
The shortest distance is 361
Segmentation fault

Thanks for your suggestions,
Tamas 

-- 
Tamas Hegedus, PhD
Senior Research Fellow
Department of Biophysics and Radiation Biology
Semmelweis University     | phone: (36) 1-459 1500/60233
Tuzolto utca 37-47        | mailto:tamas_at_hegelab.org
Budapest, 1094, Hungary   | http://www.hegelab.org