VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Tue Aug 31 2010 - 05:42:16 CDT

VMD has excellent documentation, so your best bet is to start here:
http://www.ks.uiuc.edu/Research/vmd/current/ug/
or here
http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/index.html

As far as scripting is concerned. Go to Extensions -> Tk Console and enter
your script there.
(Or write it to a file and source it)

Regards,
Ajasja
<http://www.ks.uiuc.edu/Research/vmd/current/ug/>

On Mon, Aug 30, 2010 at 21:33, Dan J Martingano <dynamic00_at_msn.com> wrote:

> Hey all,
>
> I am trying to use the bigdcd script with the rmsd analysis tool to
> hopefully generate a plot of a 36ns simulation I have performed (which is
> broken into 12 separate DCDs.)
>
> I was wondering if anyone knew how to go about that using a WindowsGL
> version of VMD, I am confused as where to even start with a script. Thanks
> so much!
>
> -DM
>