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From: Yuvam Bhateja (yuvamb16_at_gmail.com)
Date: Tue Oct 06 2020 - 11:17:26 CDT
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Hello experts.
I am new to VMD and Molecular Dynamics.
I want to build a ligand coated silver nanoparticle. I do not want to go
into atomistic calculation and need the composite structure for a coarse
grained calculation later.
I think the structure needs to be simulated in water.
Can someone please help what all input files I need and a step by step
procedure for constructing these files?
I have build my nanoparticle and obtained the ligand separately.
How can I reduce the no of Atoms in ligand? I obtained it from RCSB PDB.
I'll be highly obliged for any help or guidance.
Regards
Yuvam Bhateja
- Next message: John Stone: "Re: TCL script for creating multiple representations on the same molecule"
- Previous message: John Stone: "Re: How select atoms from mol 0 within "x" of mol 1?"
- Next in thread: Raman Preet Singh: "Re: Silver nanoparticle with coating of protein."
- Reply: Raman Preet Singh: "Re: Silver nanoparticle with coating of protein."
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