VMD-L Mailing List

From: Munir Ahmad (lathmun_at_gmail.com)
Date: Fri Jan 15 2016 - 12:04:48 CST

Dear John,
Thank you very much :). I removed MESA and now it's working.
Munir

On Thu, Jan 14, 2016 at 10:50 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> Delete "MESA" from your configuration, and start over, and hopefully
> that will eliminate the major issues you listed below.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Jan 14, 2016 at 10:40:53PM +0100, Munir Ahmad wrote:
> > Hi,
> > I'm trying to compile VMD from source with following options:
> >
> > LINUXAMD64 OPENGL MESA FLTK TK CUDA VRPN TCL PTHREADS
> >
> > A Compilation ends with a simple error without any details. Here is
> the
> > log
> >
> > LinkingA vmd_LINUXAMD64 ...
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
> >
> > OpenGLDisplayDevice.C:(.text+0x0): multiple definition of
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x0): first defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
> >
> > OpenGLDisplayDevice.C:(.text+0x0): multiple definition of
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x0): first defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::queue_events()':
> >
> > OpenGLDisplayDevice.C:(.text+0xa0): multiple definition of
> > `OpenGLDisplayDevice::queue_events()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xa0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::do_reposition_window(int, int)':
> >
> > OpenGLDisplayDevice.C:(.text+0x340): multiple definition of
> > `OpenGLDisplayDevice::do_reposition_window(int, int)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x340): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::x()':
> >
> > OpenGLDisplayDevice.C:(.text+0x360): multiple definition of
> > `OpenGLDisplayDevice::x()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x360): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::y()':
> >
> > OpenGLDisplayDevice.C:(.text+0x3c0): multiple definition of
> > `OpenGLDisplayDevice::y()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x3c0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::shift_state()':
> >
> > OpenGLDisplayDevice.C:(.text+0x420): multiple definition of
> > `OpenGLDisplayDevice::shift_state()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x420): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::set_cursor(int)':
> >
> > OpenGLDisplayDevice.C:(.text+0x4a0): multiple definition of
> > `OpenGLDisplayDevice::set_cursor(int)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x4a0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::reshape()':
> >
> > OpenGLDisplayDevice.C:(.text+0x4d0): multiple definition of
> > `OpenGLDisplayDevice::reshape()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x4d0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::readpixels(int&,
> > int&)':
> >
> > OpenGLDisplayDevice.C:(.text+0x620): multiple definition of
> > `OpenGLDisplayDevice::readpixels(int&, int&)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x620): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::update(int)':
> >
> > OpenGLDisplayDevice.C:(.text+0x6b0): multiple definition of
> > `OpenGLDisplayDevice::update(int)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x6b0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::spaceball(int*,
> > int*, int*, int*, int*, int*, int*)':
> >
> > OpenGLDisplayDevice.C:(.text+0x700): multiple definition of
> > `OpenGLDisplayDevice::spaceball(int*, int*, int*, int*, int*, int*,
> int*)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x700): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::read_event(long&,
> > long&)':
> >
> > OpenGLDisplayDevice.C:(.text+0x780): multiple definition of
> > `OpenGLDisplayDevice::read_event(long&, long&)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x780): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::do_resize_window(int, int)':
> >
> > OpenGLDisplayDevice.C:(.text+0xbb0): multiple definition of
> > `OpenGLDisplayDevice::do_resize_window(int, int)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xbb0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
> >
> > OpenGLDisplayDevice.C:(.text+0xd80): multiple definition of
> > `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xd80): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::OpenGLDisplayDevice()':
> >
> > OpenGLDisplayDevice.C:(.text+0xe30): multiple definition of
> > `OpenGLDisplayDevice::OpenGLDisplayDevice()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xe30): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::OpenGLDisplayDevice()':
> >
> > OpenGLDisplayDevice.C:(.text+0xe30): multiple definition of
> > `OpenGLDisplayDevice::OpenGLDisplayDevice()'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xe30): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> > `OpenGLDisplayDevice::open_window(char*, int*, int*, int, char**)':
> >
> > OpenGLDisplayDevice.C:(.text+0xf90): multiple definition of
> > `OpenGLDisplayDevice::open_window(char*, int*, int*, int, char**)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xf90): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::init(int,
> char**,
> > VMDApp*, int*, int*)':
> >
> > OpenGLDisplayDevice.C:(.text+0x1fc0): multiple definition of
> > `OpenGLDisplayDevice::init(int, char**, VMDApp*, int*, int*)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x1fc0): first
> defined
> > here
> >
> > OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::prepare3D(int)':
> >
> > OpenGLDisplayDevice.C:(.text+0x20d0): multiple definition of
> > `OpenGLDisplayDevice::prepare3D(int)'
> >
> > OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x20d0): first
> defined
> > here
> >
> > Stride.o: In function `ss_from_stride(DrawMolecule*)':
> >
> > Stride.C:(.text+0x52): warning: the use of `tempnam' is dangerous,
> better
> > use `mkstemp'
> >
> > collect2: error: ld returned 1 exit status
> >
> > make: *** [vmd_LINUXAMD64] Error 1
> >
> > Any help would be highly appreciated.
> >
> > Munir
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>