VMD-L Mailing List

From: George Tzotzos (gtzotzos_at_me.com)
Date: Tue Dec 20 2011 - 13:52:02 CST

Apologies for the earlier message which I now recall.

Checking the "Calculate detailed info for ALL BONDS" does the trick.

Regards

George

On Dec 20, 2011, at 8:46 PM, George Tzotzos wrote:

> I'm dealing with a 2ns AMBER receptor/ligand complex. I've loaded the trajectory and created a 2nd representation in which the water molecules are not included. I used the Hbond plugin and had:
>
> Selection 1: protein
> Selection 2: resname IND whereby IND is the name of the ligand.
>
> The MultiPlot output shows numerous Hbonds.
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> My question is whether it is possible to print the residues with which the ligand forms Hbonds.
>
> I appreciate that this may be a trivial issue but I'm far from calling myself a seasoned VMD user. Your help will be greatly appreciated
>
> George
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