VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Apr 05 2017 - 14:27:11 CDT

Hi,
  The only VMD "membrane" plugin I'm aware of in VMD is a tool for
building lipid membranes by replicating a template membrane box,
either POPC/POPE and generating a new structure. That tool doesn't
"calculate" anything, it only generates a structure. I'm afraid that
without substantially more detailed information about exactly what
steps you took and what your outcome was, that nobody would be able
to give you a solution to the problem you are having.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Apr 05, 2017 at 05:16:29PM +0530, Shashank Ranjan Srivastava wrote:
> Hello,
> I am trying to calculate membrane thickness using membrane plugin tool
> (version 1.1)Â but in place of protein it shows some random colour that
> should not be there because I am specifically selecting P-atom that is not
> there in protein.
> how to fix this problem? could you please help me out to fix this problem.
> Thank You
> --
> Shashank Ranjan Srivastava
> Molecular Biophysics Laboratory
> Department of Biological Sciences,
> IISER-Bhopal,
> Madhya Pradesh 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/