VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Sat Dec 12 2020 - 11:44:47 CST

He has emailed VMD-L and others are replying to his inquiries.
I have never received any direct emails from him, so I'm not sure
what he's referring to when he says he has emailed before.

Best,
  John

On Sat, Dec 12, 2020 at 05:01:31PM +0300, Onur Alptürk wrote:
> To whom this may concern;
>
>
>
> My name is Onur Alpturk and I am an assistant professor at Istanbul
> Technical University. I have been utilizing the script written by you to
> obtain PSF files of nucleic acids and I am experiencing a general problem.
> This is why I am writing to you to seek your assistance.
>
>
>
> I have been working on the elastic properties of certain nucleic acids. In
> that regard, I have to carry out some simulation, which demands the
> generation of PSF files, at first. Software, in conjunction with some
> servers I accessed, build dsDNA where the nucleobases are labeled as DC or
> DT, instead of conventional nomenclature as C or T, for instance. For this
> reason, I think that the script I have been using failed to generate the
> proper PSF files. I was wondering how I can overcome this problem. I would
> appreciate it if you could guide me.
>
>
>
> With kindest regards,
>
>
>
> Onur
>
>
>
> Onur Alpturk, Ph.D.
>
> Istanbul Technical University,
>
> Department of Chemistry, Room: B3-118
>
> Maslak, 34469 Istanbul
>
> Phone: +90 (212) 285 3249
>
> Fax: +90 (212) 285 6386
>
> [1]https://onuralpturk8.wixsite.com/biochemistrygroup
>
>
>
>
>
> References
>
> Visible links
> 1. https://onuralpturk8.wixsite.com/biochemistrygroup 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/