VMD-L Mailing List
From: Soumik Ghosh (soumik2805_at_gmail.com)
Date: Sun Jan 17 2021 - 11:00:56 CST
- Next message: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Previous message: Rafael Bernardi: "Re: Question about NAMD configuration files"
- Next in thread: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Reply: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
I have been trying to create Tachyon eoptential figures using vmd. When I
render it manually via the GUI it works, but when I try to render these
figures via a script, sometimes the rendering gets stuck at some %
completion. it results in incomplete rendered pictures and sometimes I have
to manually kill it. Can you please help? Following is the script I use.
-------------
display depthcue off
display projection Orthographic
mol addfile epotential.dx type dx first 0 last -1 step 1 filebonds 1
autobonds 1 waitfor all
mol addfile density.dx type dx first 0 last -1 step 1 filebonds 1 autobonds
1 waitfor all
mol delrep 0 top
mol representation Isosurface 0.000100 1 0 0 1 1
mol color Volume 0
mol selection {all}
mol material Opaque
mol addrep top
mol selupdate 0 top 0
mol colupdate 0 top 0
mol scaleminmax top 0 -0.080000 0.080000
mol smoothrep top 0 0
display resetview
scale by 0.7
drawframes top 0 {0:2}
color Display Background white
axes location Off
material change specular Transparent 0.220000
material change shininess Transparent 0.660000
material change opacity Transparent 0.300000
render Tachyon VMDscene.dat "/usr/bin/tachyon" -aasamples 12 %s -format
TARGA -o %s_rot0.tga
rotate {x} by 90
render Tachyon VMDscene.dat "/usr/bin/tachyon" -aasamples 12 %s -format
TARGA -o %s_rotx.tga
rotate {x} by -90
rotate {y} by 90
render Tachyon VMDscene.dat "/usr/bin/tachyon" -aasamples 12 %s -format
TARGA -o %s_roty.tga
------------
Thanking you in advance,
Soumik Ghosh
-- Soumik Ghosh Marie Skłodowska-Curie Fellow SciClus GmbH & Co. KG Moritz-von-Rohr-Str. 1a 07745 Jena Tel +49 3641/27893 33 Fax +49 3641/27893 99 https://urldefense.com/v3/__http://www.sciclus.de__;!!DZ3fjg!uzRsIDopW-ZG8ocqMJkKtKf3J07qPpOOZ5gdDbNhgGHONivClcmZM8EYngpD8uPDoQ$ Unternehmenssitz: Jena Handelsregister: Jena HRA 504364 Persönlich haftende Gesellschafterin: SciClus Administration GmbH – Sitz: Jena Handelsregister: Jena HRB 513216 Geschäftsführer: Dr. Burkhard Jahn, Dr. Martin Presselt https://urldefense.com/v3/__http://www.logiclab-itn.eu__;!!DZ3fjg!uzRsIDopW-ZG8ocqMJkKtKf3J07qPpOOZ5gdDbNhgGHONivClcmZM8EYngpgCfiaOw$ Follow us on Twitter: twitter.com/Leibniz_IPHT twitter.com/LogicLab_ITN
- Next message: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Previous message: Rafael Bernardi: "Re: Question about NAMD configuration files"
- Next in thread: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Reply: Vermaas, Josh: "Re: Tachyon sometimes suddenly freezes up when rendering epotential images"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]