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From: subrata paul (paul.subrata34_at_gmail.com)
Date: Wed Aug 03 2011 - 07:41:05 CDT

---------- Forwarded message ----------
From: subrata paul <paul.subrata34_at_gmail.com>
Date: Thu, Jul 28, 2011 at 1:49 PM
Subject: hbond analysis
To: majordomo_at_ks.uiuc.edu

Dear Sir,
I have done my simulation in amber10 with a disscharide (glycam force field)
and water .Now i want to calculate hbond in VMD,
But I am facing problem in selection 1 and selection2.

How I select selection1 for disscharide (1GA0GA)?
I tryed with 1GA_at_O2 ,0GA_at_O2, but it is not working. How to solve the
problem?
for selection 2 how I select water molecule??

thanking you
subrata
IITGuwahati