VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Aug 23 2012 - 09:43:37 CDT
- Next message: John Stone: "Re: Re: Error building VMD plugins from CVS 21.08.2012"
- Previous message: Vlad Cojocaru: "Re: Re: Error building VMD plugins from CVS 21.08.2012"
- In reply to: oguz gurbulak: "shift the molecules via VMD"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
Please read through the VMD tutorials and learn about atom
selections in the scripting interface. Once you know how to
make atom selections, you can use the various "move" commands
to alter the positions of the molecules. There are examples in
both the tutorials and more extensive documentation in the
VMD User's Guide.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Thu, Aug 23, 2012 at 03:11:18AM -0700, oguz gurbulak wrote:
> Dear All,
> I have two different types of molecules with segnames ASL and AZL. And I
> want to shift ASL and AZL molecules and change the positions of the
> molecules along the z axis in the simulation box for one record or every
> record when I load dcd file into the psf file. Is it possible to do it ?
> Could you please help me about this issue ?
> Thanks for the help.
> Kind regards.
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
- Next message: John Stone: "Re: Re: Error building VMD plugins from CVS 21.08.2012"
- Previous message: Vlad Cojocaru: "Re: Re: Error building VMD plugins from CVS 21.08.2012"
- In reply to: oguz gurbulak: "shift the molecules via VMD"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]