VMD-L Mailing List

From: Roman Petrenko (rpetrenko_at_gmail.com)
Date: Wed May 13 2009 - 17:09:09 CDT

Dear developers,
people are frequently asking this. Wouldn't it be nice to have a
button in the "Extensions" menu saying something like "Print out my
actions" or "Save to file my actions".

On Wed, May 13, 2009 at 5:19 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> Hi,
>  Everything that one can do in the GUI can also be done by Tcl commands.
> You can see the commands that correspond to GUI actions through the use
> of the "logfile" command (see VMD User's Guide).  Entering "logfile console"
> will cause all commands to be printed on the VMD console as you interact
> with the program.  You can stop this with "logfile off".  That's a shortcut
> if you don't want to read the User's Guide for the Tcl commands that
> correspond to creating graphical representations, etc.
>
> Cheers,
>  John Stone
>  vmd_at_ks.uiuc.edu
>
> On Wed, May 13, 2009 at 04:54:47PM +0800, accomp lin wrote:
>> Hi all,
>>
>> I wish to visualize the bonds in my system with different bonds radius. I know that this can be done by some adjustment in graphics-representations muen. but my system is fairly large, I don't think i can change the it one by one. So does vmd recoginzed some tcl commands to control specific bond raduis so that the this can be done by a script?
>>
>> thanks in advance
>>
>> Jiaqi
>>
>>
>>       ___________________________________________________________
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> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
>  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078
> 

-- 
Roman Petrenko
Physics Department
University of Cincinnati