VMD-L Mailing List

From: Jevgenij Raskatov (jraskato_at_ucsc.edu)
Date: Mon Feb 02 2015 - 20:15:45 CST

Dear users,

I would like to introduce chirality inversions (i.e. L- to D- amino acid
mutation) into a protein. Does anyone have any recommendation on how to do
it?

So far, I attempted using the following instructions

http://www.ks.uiuc.edu/Training/Tutorials/science/topology/topology-html/node4.html

However, the resultant non-natural amino acid *DAL* is not recognized by
vmd when I load the topology file

I would be very grateful for suggestions

Many thanks in advance

Jevgenij 

-- 
Dr. Jevgenij A. Raskatov
Assistant Professor in Chemistry and Biochemistry
Tel.: +1-831-459-2978
Department of Chemistry and Biochemistry
Physical Science Building 356
1156 High Street
Santa Cruz, CA
95064 USA