VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Feb 19 2020 - 13:00:49 CST

Hi,
  I've got to run to a meeting, but you're a reasonable fraction of
the way there. It appears that something went wrong in terms of your
compilation/installation of the VMD plugins, but otherwise the startup
messages are fairly reasonable. I don't think a Pi can handle GLSL, so
that's no surprise.

Best,
  John

On Wed, Feb 19, 2020 at 10:39:31AM -0500, Joe Konecny wrote:
> I have absolutely zero knowledge on what vmd does but a friend asked
> me to get it running on raspberry pi. So I did but I noticed a few
> messages on startup that makes me wonder if it will work correctly
> for him. Mainly with GLSL rendering and packages that could not be
> loaded. Can anyone comment on these messages and how they will
> affect the ability of vmd to do what it's supposed to do?
>
>
> pi_at_raspberrypi:~/vmd-1.9.4a38/LINUXAARCH64ARM $ ./vmd_LINUXAARCH64ARM
> Info) VMD for LINUXAARCH64ARM, version 1.9.4a38 (February 19, 2020)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 4 CPUs detected.
> Info) Free system memory: 3695MB (94%)
> Warning) Detected X11 'Composite' extension: if incorrect display occurs
> Warning) try disabling this X server option. Most OpenGL drivers
> Warning) disable stereoscopic display when 'Composite' is enabled.
> Warning) Simple graphics mode: OpenGL 1.0, no extensions
> Info) OpenGL renderer: V3D 4.2
> Info) Features:
> Info) GLSL rendering mode is NOT available.
> The irspecgui package could not be loaded:
>
> The multiseq package could not be loaded:
>
> The networkview package could not be loaded:
>
> The pmepot_gui package could not be loaded:
>
> The autoionizegui package could not be loaded:
>
> The solvate package could not be loaded:
>
> The autopsf package could not be loaded:
>
> The cggui package could not be loaded:
>
> The dowser_gui package could not be loaded:
>
> The chirality_gui package could not be loaded:
>
> The cispeptide_gui package could not be loaded:
>
> The forcefieldtoolkit package could not be loaded:
>
> The mdff_gui package could not be loaded:
>
> The membrane package could not be loaded:
>
> The mergestructs package could not be loaded:
>
> The molefacture package could not be loaded:
>
> The mutator package could not be loaded:
>
> The alascan package could not be loaded:
>
> The autoimd package could not be loaded:
>
> The qwikmd package could not be loaded:
>
> vmd > Info) Using plugin pdb for structure file /home/pi/m.pdb
> Info) Using plugin pdb for coordinates from file /home/pi/m.pdb
> Info) Determining bond structure from distance search ...
> Info) Analyzing structure ...
> Info) Atoms: 17
> Info) Bonds: 16
> Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
> Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
> Info) Residues: 2
> Info) Waters: 0
> Info) Segments: 1
> Info) Fragments: 1 Protein: 1 Nucleic: 0
> Info) Finished with coordinate file /home/pi/m.pdb.
> Info) VMD for LINUXAARCH64ARM, version 1.9.4a38 (February 19, 2020)
> Info) Exiting normally. 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/