VMD-L Mailing List

From: Xiaohui She (xshe4_at_wisc.edu)
Date: Wed Aug 12 2015 - 14:25:05 CDT

Thank you professor Richard!

How to change the default length to only show the O-H bonds in VMD? Can you show me a little more, or where can I find the corresponding information?

Best wishes,
Xiaohui

On 08/12/15, Richard Wood wrote:
> You O-H bonds are beyond the default length to visualize them.
>
> Richard
> ________________________________________
> From: owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] on behalf of Xiaohui She [xshe4_at_wisc.edu]
> Sent: Wednesday, August 12, 2015 11:32 AM
> To: vmd mailing list
> Subject: vmd-l: Delete redundant bonds in water molecule
>
> Dear all,
>
> I am using 4-site water model (O, H1, H2 and Virtual site) in my simulation. When I visualize it with VMD, there are excess bonds (H-V and V-O) except the O-H bond. Is there any method to delete the excess bonds and only show the O-H bond?
>
>
> Any help will be appreciated!
>
>
> Best wishes,
>
>
> Xiaohui
> University of Wisconsin-Madison