VMD-L Mailing List

From: Gustavo Seabra (gustavo.seabra_at_gmail.com)
Date: Wed Nov 25 2015 - 06:59:53 CST

Dear all,

I’m having a weird problem trying to open a PDBQT file generated by ADT in VMD. VMD can open the file using PDB format, but only displays it as atom-based representations. Whenever I try to visualize using a backbone-based representation (ribbons, cartoon, etc.), nothing shows. Has anyone here dealt with a similar problem before?

If anyone wants to try, the file is here:
https://www.dropbox.com/s/ybno7ezf60jgboq/Compound14-3U1I.pdbqt?dl=0

Thanks a lot!
Gustavo Seabra