VMD-L Mailing List
From: Himanshu Joshi (himanshuphy87_at_gmail.com)
Date: Tue Oct 29 2013 - 02:16:11 CDT
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Hi friends,
I want to do some H bonds analysis for my AMBER DNA simulation.
I have a confusion about its terminology, as it shows only two H bonds
between guanine and cytosine in the detail log file which should be three,
Why is it so ? Is it conventional or my structure has missing hydrogen bond
at all which seems very less probable.
Kindly give your valuable feedback.
-- *With Regards, HIMANSHU JOSHI Graduate Scholar, Center for Condense Matter Theory Department of Physics IISc.,Bangalore India 560012*
- Next message: Lukáš Pravda: "Creating custom molecule in VMD scripting"
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- Reply: Josh Vermaas: "Re: Hydrogen Bond Calculation in VMD for DNA in VMD"
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