VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 25 2010 - 16:32:25 CST

Hi,
  I already fixed the syntax errors in the startup script, there were
two lines that used "==" in the bourne shell startup script that are
fixed in the current CVS version of VMD.

I'll need more details on what is going on with the NewRibbons representation?
Is the secondary structure representation not displayed, or you get corrupted
graphics? We need more details on this.

Cheers,
  John

On Mon, Jan 25, 2010 at 05:08:58PM -0500, Axel Kohlmeyer wrote:
> On Mon, 2010-01-25 at 11:50 -0800, A D wrote:
>
> seth,
>
> you have to provide some more information.
> there must have been more output to the screen.
>
> i'm guessing that the first line in your vmd script
> is "#!/bin/sh"
>
> can you please change this to
> "#!/bin/sh -vx"
> and send me the output.
>
> that should make it easier to pinpoint the location
> of the problem in the startup script.
>
> axel.
>
> > Hello,
> > I am getting the following error when vmd starts in UBUNTU:
> >
> > optimus_at_optimus:$ vmd
> > [: 338: i686: unexpected operator
> > [: 338: i686: unexpected operator
> >
> > And afterwords the new ribbon/cartoon representations do not really
> > work.
> > What do you think I should do?
> > Thanks
> > Seth
> >
> >
> >
> >
> >
> >
>
> --
> Dr. Axel Kohlmeyer akohlmey_at_gmail.com
> Institute for Computational Molecular Science
> College of Science and Technology
> Temple University, Philadelphia PA, USA. 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078