From: John Stone (
Date: Wed Jul 28 2010 - 16:23:51 CDT

  Thanks, we will let the multiseq developers know about the problem
you have encountered and pass along any workarounds or suggestions
they may have.

  John Stone

On Tue, Jul 27, 2010 at 05:54:53PM -0400, Ian Stokes-Rees wrote:
> On 7/27/10 3:37 PM, Ian Stokes-Rees wrote:
> > I'm trying to do two things with the pair of structures: 3cex and
> > 1iesa_ (SCOP code). I would like to use MultiSeq to try and align
> > 1iesa_ with 3cex using STAMP. I am failing to do this, and am having
> > trouble interpreting the error message. To check that STAMP is working
> > properly I have also tried aligning the two identical domains of 3cex.
> > I cannot get this to work properly, which makes me think something else
> > may be going wrong.
> An even better example that also does not work comes from comparing the
> 12 PDB files here:
> These all align with 2vzf (RCSB PDB code), and have already been
> "superposed" using COOT's built-in SSM function. I simply wanted
> VMD/MultiSeq/Stamp to align these again and provide me with Qres
> coloring. It does not work.
> Thanks in advance for any advice.
> Ian

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