VMD-L Mailing List

From: Nuno Sousa Cerqueira (nscerque_at_fc.up.pt)
Date: Thu Dec 03 2009 - 17:43:02 CST

Hello,

I am still having problems in readinf desmond trajectories using a
script.
my code is like this:

         # load Maestro File
         puts "\n####### Loading Maestro File ...."
         mol new $lambdaDirectory/$rootFile-in.cms waitfor all
         display update ui ; # update vmd view

         #load trajectory dtr
         puts "\n####### Loading Desmond trajectory ....."
         mol addfile [pwd]/$lambdaDirectory/$rootFile\_trj/clickme.dtr
waitfor all molid top
         display update ui ; # update vmd view

is this the best way to load the trajectory?
Something it complains about a missing file. It seems that there is a
problem in reading the directory scheme where the trajectory files are
stored.

Any idea.

Regards, Nuno