VMD-L Mailing List

From: Mahendra B Thapa (thapamb_at_mail.uc.edu)
Date: Mon Jul 02 2012 - 11:56:43 CDT

Dear VMD users,

                              I generated amber mdcrd file using amber 12
with the amber force field. To view the structure, I at first loaded *prmtop
file* with "file type - AMBER7 Parm" and then loaded *mdcrd file* with "
file type - Amber coordinates with periodic box". Unfortunately, VMD did
not produce image instead just a line like image. Interestingly when I
used the *pdb- format *, it worked fine. The question is: why VMD looks
like not supporting prmtop and mdcrd files.

Thanks,
Mahendra Thapa
University of Cincinnati