From: Subramanian Vaitheeswaran (vaithee_at_umd.edu)
Date: Wed Mar 14 2007 - 12:21:53 CDT

When I open a saved state (*.vmd file) for a molecule, the display opens correctly with the saved orientation of the molecule, but with the z-axis pointing directly out of the screen. Does a saved state also save the rotated coordinates or only the viewing angle? I thought it is the latter, but then why are the coord axes rotated?

How can I save the rotated coords? I tried "Save coordinates" from the Main menu, but that only saves the original coords.

thanks,
Vaithee