From: Charu Sharma (JRF) (charu.sharma_at_lnmiit.ac.in)
Date: Wed Jul 24 2019 - 08:59:05 CDT

Sir I want my figure to be superimposed I want to analyze them that what is
the difference between the pdb file when they are created after
minimization, heating and production run. So I have make three pdb files
now the question arises how to merge them in one figure rather to analyze
single figure?

On Wed, Jul 24, 2019, 19:12 John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> There are infinite ways of "making a single figure" it is completely
> unclear what the requirements of this "single figure" are, so nobody
> will have much to say to help until you provide far more specific details
> about what it is that you hope to accomplish. From your two emails,
> the only things that is clear is that you want one figure as a result,
> but you say nothing about whether you want three images side-by-side,
> superimposed, colored in some particular way, etc. You've got to put
> some real effort into formulating your question and writing a clear
> and understandable email, or nobody will take the time to try
> and answer you.
>
> Best regards,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Jul 24, 2019 at 02:27:31PM +0530, Charu Sharma (JRF) wrote:
> > Sir there are the steps of simulation where we perform minimization,
> then
> > heating and then production dynamics.. Like this the pdbĀ file that
> are
> > generated after each step.. Then I have to merge all three and produce
> > single figure..Ā
> > On Wed, Jul 24, 2019, 14:18 Charu Sharma (JRF)
> > <[1]charu.sharma_at_lnmiit.ac.in> wrote:
> >
> > ---------- Forwarded message ---------
> > From: KARISHMA SHARMA <[2]18pph003_at_lnmiit.ac.in>
> > Date: Wed, Jul 24, 2019, 13:31
> > Subject:
> > To: Charu Sharma (JRF) <[3]charu.sharma_at_lnmiit.ac.in>
> >
> > how to merged single figure of the three PDB files: initial, after
> > minimization, after 1ns run simulation, in VMD.
> > KARISHMA SHARMA
> > JRF (JUNIOR RESEARCH FELLOW)
> > PhD SCHOLAR, LNMIIT
> >
> > References
> >
> > Visible links
> > 1. mailto:charu.sharma_at_lnmiit.ac.in
> > 2. mailto:18pph003_at_lnmiit.ac.in
> > 3. mailto:charu.sharma_at_lnmiit.ac.in
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>