VMD-L Mailing List

From: ramya narasimhan (ramya_jln_at_yahoo.co.in)
Date: Fri Mar 14 2008 - 00:46:30 CDT

Hi,
     When i view the phi-psi plot in vmd for a trajectory, it gives some residues in the disallowed region. I want to get the phi and psi angles for only those residues in disallowed region for the corresponding frame. This I got it on the graphical display by justing clicking, but i want everything to be calculated automatically. Is there any way of doing it? I saw one script in stride but it gives the secondary structure of each residue but not the angles.

Thanks in advance.
Ramya.L.

       
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