VMD-L Mailing List

From: Chitrak Gupta (chgupta_at_mix.wvu.edu)
Date: Fri Feb 03 2017 - 10:45:02 CST

Hi Priti,

The hbonds plugin allows you to define a "selection 1" and "selection 2".
You could select the two monomers as selections 1 and 2 respectively. If
you want the detailed information, make sure you select the "All hbonds" in
the "Calculate detailed info for:" option, and check the "Write output
files?" option.

Hope this helps,
Chitrak.

On Fri, Feb 3, 2017 at 12:58 AM, PRITI ROY <priitii.roy_at_gmail.com> wrote:

> Dear all,
> I am a beginner in this field. I want to know the only interacting h-bond between the dimer of protein. I used H-bond plugin but it shows all bonding. I wanted to know the interacting backbone-backbone, backbone-sidechain, sidechain-sidechain h-bond between the dimer.
>
> Thanks,
> Priti Roy
>
>