VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri May 18 2007 - 16:21:10 CDT

Hi,
  You can use the atomselect command to perform arbitrary
translations, rotations, and so on. See the VMD User's Guide
and tutorials for the details on how to use the atomselect command.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, May 17, 2007 at 03:39:58PM +0200, baxy wrote:
> Hi,
>
>
>
> I need some quick help with rotating my protein placed in lipid bilayer. I'm try to run the simulation with trans membrane protein and I'm having trouble with positioning my protein properly in the bilayer. it should go through the membrane and not parallel with it. How can I rotate it?
>
>
>
> Thank you for any help,
>
>
>
> robert
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078