VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Thu Mar 28 2013 - 17:42:06 CDT

You cannot. Use catdcd for it. Axel.
------Original Message------
From: Yarrow Madrona
Sender: owner-vmd-l_at_ks.uiuc.edu
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: vmd-I: remove water, protein from a dcd
Sent: Mar 28, 2013 9:45 PM

Hello,

I have 17 long trajectories (50Gigs total). I really am only interested in
what is happening to a heme cofactor and ligand. I would like to strip
everything else from the PSF and from the DCD.

The reason for this is, I can't load this dcd onto my laptop and creating
a summary-shorter dcd is not an option.

My question is: How can I strip the dcd in the command line in VMD. 

-- 
Yarrow Madrona
Graduate Student
Molecular Biology and Biochemistry Dept.
University of California, Irvine
Natural Sciences I, Rm 2403
Irvine, CA 92697
--
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
International Centre for Theoretical Physics, Trieste. Italy.