VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 19 2007 - 14:09:30 CST

Hi,
  At present you could either edit the autoionize.tcl script to
use other ion types, or use one of the other ion placement tools like
cionize to do this. If you need help, let us know. We'll be
changing the ion placement plugins in VMD to be much more flexible
as time goes on...

Cheers,
  John

On Thu, Dec 13, 2007 at 10:19:06AM -0700, Lixia Jin Day wrote:
> I used autoionize to add NA+ and CL- in the solvent by using plugin
> autoionize before. Now I want to add mg2+ ions instead of NA+. How can I do
> this? Thanks!
>
> Lixia 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078