VMD-L Mailing List

From: Mani Kandan (manikandand5110_at_gmail.com)
Date: Tue Jul 03 2018 - 13:17:22 CDT

Thanks,

I solved that problem. After adding package require inorganicbuilder, it
working very well.

Once again thanks for your help.

Manikandan

On Tue, Jul 3, 2018, 10:11 PM John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> To start out with, when you run VMD in a non-graphical mode,
> you would need to use the following command to load the plugin:
> package require inorganicbuilder
>
> That is (coincidentally) done already when running in graphical mode,
> but not in non-graphical mode, as a side effect of how GUI plugins get
> registered in the menus when VMD starts up. In general, you should
> always use "package require" commands to ensure correct operation.
>
> I don't know to what extent the inorganic builder plugin works
> when running without the GUI, but you will soon find out.
>
> Best regards,
> John Stone
> vmd_at_ks.uiuc.edu
>
>
> On Wed, Jun 27, 2018 at 09:02:00PM +0530, Mani Kandan wrote:
> > Dear all,
> >
> > I am trying to run inorganic builder in my cluster with
> no
> > display mode. I have written the command in the Tcl file and running by
> > using vmd -dispdev text -e <filename>. While running I am facing
> following
> > error
> >
> > invalid command name "inorganicBuilder::initMaterials"
> > invalid command name "inorganicBuilder::newMaterialHexagonalBox"
> > 0
> > can't read "box": no such variable
> > can't read "box": no such variable
> > file4
> > can't read "box": no such variable
> > can't read "box": no such variable
> > atomselect0
> > atomsel: frame -1 out of range for molecule 0
> > atomsel: frame -1 out of range for molecule 0
> >
> >
> > Kindly help me to solve this issue and help me to run
> in
> > no display mode.
> >
> > Thanks and regards,
> >
> > MANIKANDAN D
>
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>