VMD-L Mailing List
From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Fri Jan 17 2003 - 22:08:41 CST
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Hi vms's,
I am loading a pdb file into vmd that contains a nucleic acid polymer (a
3mer of Adenosine). When I write it out there are some hydrogen atoms that
are written missplaced (aligned wrong) -they are called for example 1H6
and 2H6- so when I read the structure in leap, it complains that it does
not know these atom types.
If I delete the space in front of the 1H6 and 2H6 atoms in the pdb file,
then everything is fine.
Is this a known bug? Can it be fixed? ( I know it is a minor thing...)
Thanks,
Ioana
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