VMD-L Mailing List
From: Diego Vazquez (dsvazquez86_at_gmail.com)
Date: Tue Oct 20 2015 - 21:44:05 CDT
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Hi Daniela!
For water cluster analysis I recommend you to check the watclust plugin for
VMD (https://watclust.wordpress.com/). You even could study thermodynamic
properties of the water clusters over your trajectory. Best!
Diego
-- On 19 October 2015 at 17:05, Daniela Rivas <dani.rivas.r_at_gmail.com> wrote: > Hi, > > I have a trajectory file and I would like to plot the number of water > molecules within a distance from a residue in time. I've been trying to > figure out how to do it but I couldn't find anything. > > I hope you can help me. > > Thanks, > Daniela. > -- ************************************************** Lic. Diego Sebastian Vazquez Laboratorio de Biofísica de Proteínas IQUIFIB - Departamento de Química Biológica Facultad de Farmacia y Bioquímica Universidad de Buenos Aires, Argentina Junín 956 (1113) Tel: 1534476306 dsv_at_qb.ffyb.uba.ar
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