From: Diego Vazquez (
Date: Tue Oct 20 2015 - 21:44:05 CDT

Hi Daniela!

For water cluster analysis I recommend you to check the watclust plugin for
VMD ( You even could study thermodynamic
properties of the water clusters over your trajectory. Best!


On 19 October 2015 at 17:05, Daniela Rivas <> wrote:
> Hi,
> I have a trajectory file and I would like to plot the number of water
> molecules within a distance from a residue in time. I've been trying to
> figure out how to do it but I couldn't find anything.
> I hope you can help me.
> Thanks,
> Daniela.
Lic. Diego Sebastian Vazquez
Laboratorio de Biofísica de Proteínas
IQUIFIB - Departamento de Química Biológica
Facultad de Farmacia y Bioquímica
Universidad de Buenos Aires, Argentina
Junín 956 (1113)
Tel: 1534476306