VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Dec 23 2011 - 17:46:46 CST

Hi,
  There's not currently a way to generate plots via text commands
for that particular plugin, as it uses the Tk GUI to generate the image.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sat, Dec 10, 2011 at 09:30:28AM +0530, Gurunath Katagi wrote:
> Dear all,
> I have done the simulation of 10 proteins for 30ns using NAMD . I want
> to get the distribution of phis/psi angle (Ramachandran plot) of few
> residues individually in each of the proteins using the entire
> trajactory ..and save the plot in ps format.
>
> i am doing this by Ramplot plugin(GUI) in vmd 1.9 for this.. and its
> wotking fine..
> now my question is , is there a alternative way to do this using
> commands line mode using tcl scripting since many of the plugins
> (Hydrogens bonds/ Salt bridge) come in both GUI aswell as text mode .
>
> Can anybody look into it and suggest ..
>
> Thank you
> Gurunath 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078