VMD-L Mailing List
From: Fred Moore (moore_at_whitman.edu)
Date: Tue Mar 27 2007 - 14:06:21 CDT
- Next message: John Stone: "Re: representation selection funnies"
- Previous message: John Stone: "Re: Question about overlaying structures"
- Next in thread: John Stone: "Re: representation selection funnies"
- Reply: John Stone: "Re: representation selection funnies"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
2nd posting from a newbie to VMD.
I'm running the latest version on a macintosh pb 12" powerpc with the
latest osx.
I'm trying to view and animate a .pdb file full of chloroform
molecules. 475 molecules per frame, 2500 frames. The .pdb file names
the atoms in each molecule:
C1, CL1, CL2, CL3, H
Those names show up properly when I go to Graphics->Representations
and look under "keyword".
In trying to view and represent these critters I've used different
representations.
A: style: CPK, color:Element, Selection: all
B: A: style: CPK, color:Element, Selection: { same residue as (name
C1 and z>19 and z<61)}
C: A: style: licorice, color:Name, Selection: { same residue as (name
C1 and z>19 and z<61)}
I have turned off the display of representation "A" by double
clicking on it. B and C are turned on.
Here's the newbie question: Should those two representations be
showing the same molecules? I must be missing something because
they're not.
It's not the coloring or drawing method either, as I can make them
identical and the two representations still show different molecules.
What am I missing?
Thanks in advance,
Fred M.
- Next message: John Stone: "Re: representation selection funnies"
- Previous message: John Stone: "Re: Question about overlaying structures"
- Next in thread: John Stone: "Re: representation selection funnies"
- Reply: John Stone: "Re: representation selection funnies"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]